Sign in Join

Live chat for Free Pascal, Lazarus, Delphi and every Pascal programmer.

Catalog · How the catalog works

Random project

Dissertation

code accompanying dissertation chapters

View on GitHub

Anyone may press Interesting, signed in or not. It helps others find this project.

Member rating

No ratings yet.

Sign in to rate this project.

README

R code accompanying my dissertation

The code is organized by dissertation chapters:

  • Chapter 2 - Collecting 3D digital data on primate skulls
  • Chapter 3 - Using n-point alignment to approximate maximum intercuspation for digital primate crania and mandibles
  • Chapter 4 - Macroevolutionary correlates of primate skull shape
  • Chapter 5 - Macroevolutionary integration and modularity in the primate skull

The necessary R packages can be installed from CRAN, with the exception of 'ggtree' and 'EBImage', which can be installed from bioconductor like this:

pascal
source("https://bioconductor.org/biocLite.R")
biocLite("ggtree")
biocLite("EBImage")

File paths are relative to the main directory of the repository.

Data required to run the code are included in the repo, including files for landmarks (TXT), phylogeny (NEX), and primate traits (CSV).

The 3D surfaces (PLY format) from which landmarks were collected can be downloaded from figshare.